Function for Nested Resampling — fselect

Function to conduct nested resampling.

Usage

fselect_nested(
  method,
  task,
  learner,
  inner_resampling,
  outer_resampling,
  measure,
  term_evals = NULL,
  term_time = NULL,
  ...
)

Arguments

method: (character(1))
Key to retrieve fselector from mlr_fselectors dictionary.
task: (mlr3::Task)
Task to operate on.
learner: (mlr3::Learner)
Learner to optimize the feature subset for.
inner_resampling: (mlr3::Resampling)
Resampling used for the inner loop.
outer_resampling: mlr3::Resampling)
Resampling used for the outer loop.
measure: (mlr3::Measure)
Measure to optimize. If NULL, default measure is used.
term_evals: (integer(1))
Number of allowed evaluations.
term_time: (integer(1))
Maximum allowed time in seconds.
...: (named list())
Named arguments to be set as parameters of the fselector.

Value

mlr3::ResampleResult

Examples

# Nested resampling on Palmer Penguins data set
rr = fselect_nested(
  method = "random_search",
  task = tsk("penguins"),
  learner = lrn("classif.rpart"),
  inner_resampling = rsmp ("holdout"),
  outer_resampling = rsmp("cv", folds = 2),
  measure = msr("classif.ce"),
  term_evals = 4)

# Performance scores estimated on the outer resampling
rr$score()
#>                 task  task_id             learner              learner_id
#> 1: <TaskClassif[50]> penguins <AutoFSelector[46]> classif.rpart.fselector
#> 2: <TaskClassif[50]> penguins <AutoFSelector[46]> classif.rpart.fselector
#>            resampling resampling_id iteration              prediction
#> 1: <ResamplingCV[20]>            cv         1 <PredictionClassif[20]>
#> 2: <ResamplingCV[20]>            cv         2 <PredictionClassif[20]>
#>    classif.ce
#> 1:  0.0755814
#> 2:  0.1569767

# Unbiased performance of the final model trained on the full data set
rr$aggregate()
#> classif.ce 
#>  0.1162791